Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
Edge stableIdentifier 1
ExternalOntology stableIdentifier 1
CatalystActivity stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
Species stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
PhysicalEntity stableIdentifier 1
Event stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
PositiveRegulation stableIdentifier 1
Polymerisation stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
Taxon stableIdentifier 1
StableIdentifier stableIdentifier 1
Regulation stableIdentifier 1
Person stableIdentifier 1
Publication stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
ReferenceSequence stableIdentifier 1
ReferenceMolecule stableIdentifier 1
ControlledVocabulary stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
FrontPage stableIdentifier 1
Disease stableIdentifier 1
CandidateSet stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
PathwayCoordinates stableIdentifier 1
Complex stableIdentifier 1
InstanceEdit stableIdentifier 1
Pathway stableIdentifier 1
PathwayVertex stableIdentifier 1
Reaction stableIdentifier 1
EntityVertex stableIdentifier 1
ModifiedResidue stableIdentifier 1
Affiliation stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
Figure stableIdentifier 1
EvidenceType stableIdentifier 1
Summation stableIdentifier 1
SequenceOntology stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
Depolymerisation stableIdentifier 1
BlackBoxEvent stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
PathwayDiagram stableIdentifier 1
Compartment stableIdentifier 1
EntitySet stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
_Deleted stableIdentifier 1
Vertex stableIdentifier 1
ReferenceIsoform stableIdentifier 1
ReferenceEntity stableIdentifier 1
FunctionalStatus stableIdentifier 1
URL stableIdentifier 1
EntityCompartment stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
OtherEntity stableIdentifier 1
Requirement stableIdentifier 1
_Release stableIdentifier 1
OpenSet stableIdentifier 1
Polymer stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
FailedReaction stableIdentifier 1
ReferenceDatabase stableIdentifier 1
DefinedSet stableIdentifier 1
Book stableIdentifier 1
GO_CellularComponent stableIdentifier 1
ReplacedResidue stableIdentifier 1
DatabaseObject stableIdentifier 1
PsiMod stableIdentifier 1
LiteratureReference stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
NegativeRegulation stableIdentifier 1
ReactionCoordinates stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
FunctionalStatusType stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
CellType stableIdentifier 1
FragmentModification stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
ReactionVertex stableIdentifier 1
TranslationalModification stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
ReferenceGroup stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
SimpleEntity stableIdentifier 1
ConcurrentEventSet stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.