Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
ReferenceRNASequence stableIdentifier 1
ReferenceGroup stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
NegativeRegulation stableIdentifier 1
Publication stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
Regulation stableIdentifier 1
Event stableIdentifier 1
DefinedSet stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
ReferenceMolecule stableIdentifier 1
ReferenceIsoform stableIdentifier 1
Species stableIdentifier 1
Depolymerisation stableIdentifier 1
FailedReaction stableIdentifier 1
OpenSet stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
FragmentModification stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
ModifiedResidue stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
ControlledVocabulary stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
PsiMod stableIdentifier 1
CellType stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
URL stableIdentifier 1
Summation stableIdentifier 1
GO_CellularComponent stableIdentifier 1
TranslationalModification stableIdentifier 1
Person stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
Vertex stableIdentifier 1
Pathway stableIdentifier 1
Requirement stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
Compartment stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
Polymer stableIdentifier 1
PhysicalEntity stableIdentifier 1
ReferenceDatabase stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
LiteratureReference stableIdentifier 1
ReferenceEntity stableIdentifier 1
ReactionVertex stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
EntityCompartment stableIdentifier 1
PathwayDiagram stableIdentifier 1
CandidateSet stableIdentifier 1
PositiveRegulation stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
ReferenceSequence stableIdentifier 1
OtherEntity stableIdentifier 1
ReplacedResidue stableIdentifier 1
CatalystActivity stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
Complex stableIdentifier 1
FunctionalStatusType stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
EntityVertex stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
Polymerisation stableIdentifier 1
FrontPage stableIdentifier 1
SimpleEntity stableIdentifier 1
Disease stableIdentifier 1
Reaction stableIdentifier 1
BlackBoxEvent stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
EvidenceType stableIdentifier 1
PathwayVertex stableIdentifier 1
_Release stableIdentifier 1
InstanceEdit stableIdentifier 1
Taxon stableIdentifier 1
SequenceOntology stableIdentifier 1
ExternalOntology stableIdentifier 1
StableIdentifier stableIdentifier 1
Book stableIdentifier 1
EntitySet stableIdentifier 1
FunctionalStatus stableIdentifier 1
PathwayCoordinates stableIdentifier 1
DatabaseObject stableIdentifier 1
_Deleted stableIdentifier 1
Edge stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
Figure stableIdentifier 1
ReactionCoordinates stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
Affiliation stableIdentifier 1
CrosslinkedResidue stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.