Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
DeletedControlledVocabulary stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
EntityCompartment stableIdentifier 1
EntityVertex stableIdentifier 1
PositiveRegulation stableIdentifier 1
NegativeRegulation stableIdentifier 1
_Release stableIdentifier 1
BlackBoxEvent stableIdentifier 1
Vertex stableIdentifier 1
Disease stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
Compartment stableIdentifier 1
CellType stableIdentifier 1
Regulation stableIdentifier 1
ExternalOntology stableIdentifier 1
FailedReaction stableIdentifier 1
Polymer stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
ModifiedResidue stableIdentifier 1
URL stableIdentifier 1
FunctionalStatus stableIdentifier 1
Requirement stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
Event stableIdentifier 1
SequenceOntology stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
ReferenceMolecule stableIdentifier 1
ReactionCoordinates stableIdentifier 1
ReferenceEntity stableIdentifier 1
GO_CellularComponent stableIdentifier 1
Summation stableIdentifier 1
CandidateSet stableIdentifier 1
Polymerisation stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
FragmentModification stableIdentifier 1
Pathway stableIdentifier 1
Depolymerisation stableIdentifier 1
_Deleted stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
Figure stableIdentifier 1
Affiliation stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
PathwayCoordinates stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
StableIdentifier stableIdentifier 1
LiteratureReference stableIdentifier 1
FrontPage stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
Book stableIdentifier 1
Reaction stableIdentifier 1
ReferenceDatabase stableIdentifier 1
ReferenceIsoform stableIdentifier 1
Species stableIdentifier 1
PsiMod stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
Publication stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
ReferenceSequence stableIdentifier 1
InstanceEdit stableIdentifier 1
OpenSet stableIdentifier 1
PhysicalEntity stableIdentifier 1
DefinedSet stableIdentifier 1
Edge stableIdentifier 1
EntitySet stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
ControlledVocabulary stableIdentifier 1
PathwayVertex stableIdentifier 1
TranslationalModification stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
OtherEntity stableIdentifier 1
DatabaseObject stableIdentifier 1
PathwayDiagram stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
Complex stableIdentifier 1
ReplacedResidue stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
SimpleEntity stableIdentifier 1
FunctionalStatusType stableIdentifier 1
ReactionVertex stableIdentifier 1
CatalystActivity stableIdentifier 1
ReferenceGroup stableIdentifier 1
EvidenceType stableIdentifier 1
Taxon stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
Person stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.