Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
ReferenceDNASequence stableIdentifier 1
CatalystActivity stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
Vertex stableIdentifier 1
LiteratureReference stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
PositiveRegulation stableIdentifier 1
BlackBoxEvent stableIdentifier 1
InstanceEdit stableIdentifier 1
Pathway stableIdentifier 1
SequenceOntology stableIdentifier 1
Summation stableIdentifier 1
NegativeRegulation stableIdentifier 1
Polymerisation stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
ModifiedResidue stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
CellType stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
ControlledVocabulary stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
DefinedSet stableIdentifier 1
ReferenceEntity stableIdentifier 1
PsiMod stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
ReferenceIsoform stableIdentifier 1
EntityVertex stableIdentifier 1
Depolymerisation stableIdentifier 1
CandidateSet stableIdentifier 1
EntityCompartment stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
ReferenceTherapeutic stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
FunctionalStatusType stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
Event stableIdentifier 1
ChemicalDrug stableIdentifier 1
Disease stableIdentifier 1
_Release stableIdentifier 1
TranslationalModification stableIdentifier 1
URL stableIdentifier 1
Requirement stableIdentifier 1
RNADrug stableIdentifier 1
ReactionVertex stableIdentifier 1
PathwayDiagram stableIdentifier 1
Taxon stableIdentifier 1
Book stableIdentifier 1
ReplacedResidue stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
FunctionalStatus stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
OtherEntity stableIdentifier 1
OpenSet stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
Drug stableIdentifier 1
PathwayVertex stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
_Deleted stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
PathwayCoordinates stableIdentifier 1
Publication stableIdentifier 1
FrontPage stableIdentifier 1
Species stableIdentifier 1
ReferenceDatabase stableIdentifier 1
ProteinDrug stableIdentifier 1
FailedReaction stableIdentifier 1
Polymer stableIdentifier 1
DatabaseObject stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
Reaction stableIdentifier 1
Regulation stableIdentifier 1
FragmentModification stableIdentifier 1
EvidenceType stableIdentifier 1
PhysicalEntity stableIdentifier 1
GO_CellularComponent stableIdentifier 1
EntitySet stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
Complex stableIdentifier 1
ReferenceSequence stableIdentifier 1
Affiliation stableIdentifier 1
ReferenceGroup stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
ReactionCoordinates stableIdentifier 1
Compartment stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
ReferenceMolecule stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
ExternalOntology stableIdentifier 1
Edge stableIdentifier 1
SimpleEntity stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
StableIdentifier stableIdentifier 1
Person stableIdentifier 1
Figure stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.