Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
PositiveGeneExpressionRegulation stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
PsiMod stableIdentifier 1
ReferenceEntity stableIdentifier 1
ReferenceSequence stableIdentifier 1
Reaction stableIdentifier 1
ReferenceMolecule stableIdentifier 1
BlackBoxEvent stableIdentifier 1
Depolymerisation stableIdentifier 1
Disease stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
PhysicalEntity stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
LiteratureReference stableIdentifier 1
Pathway stableIdentifier 1
Complex stableIdentifier 1
ReferenceGroup stableIdentifier 1
FunctionalStatusType stableIdentifier 1
PathwayCoordinates stableIdentifier 1
StableIdentifier stableIdentifier 1
EntityCompartment stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
ReferenceIsoform stableIdentifier 1
Publication stableIdentifier 1
FrontPage stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
Edge stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
Vertex stableIdentifier 1
GO_CellularComponent stableIdentifier 1
Event stableIdentifier 1
OpenSet stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
CellType stableIdentifier 1
Polymerisation stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
ControlledVocabulary stableIdentifier 1
Requirement stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
InstanceEdit stableIdentifier 1
_Release stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
FragmentModification stableIdentifier 1
ReactionVertex stableIdentifier 1
PathwayDiagram stableIdentifier 1
CatalystActivity stableIdentifier 1
Regulation stableIdentifier 1
ReplacedResidue stableIdentifier 1
ModifiedResidue stableIdentifier 1
SequenceOntology stableIdentifier 1
EntityVertex stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
EvidenceType stableIdentifier 1
CandidateSet stableIdentifier 1
Book stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
Figure stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
OtherEntity stableIdentifier 1
Polymer stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
FailedReaction stableIdentifier 1
ReferenceDatabase stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
Taxon stableIdentifier 1
EntitySet stableIdentifier 1
TranslationalModification stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
URL stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
PathwayVertex stableIdentifier 1
FunctionalStatus stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
Compartment stableIdentifier 1
Summation stableIdentifier 1
SimpleEntity stableIdentifier 1
DefinedSet stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
Person stableIdentifier 1
ReactionCoordinates stableIdentifier 1
Species stableIdentifier 1
NegativeRegulation stableIdentifier 1
Affiliation stableIdentifier 1
ExternalOntology stableIdentifier 1
PositiveRegulation stableIdentifier 1
_Deleted stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
DatabaseObject stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.