Reactome: A Curated Pathway Database

Attributes of class 'ReferenceDatabase'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
accessUrl 1 TEXT N/A ReferenceDatabase ALL TEXT
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A ReferenceDatabase ANY TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
url 1 TEXT N/A ReferenceDatabase   TEXT

Referers of class 'ReferenceDatabase' instances

Class name Attribute name Cardinality
ReferenceDNASequence referenceDatabase 1
Disease referenceDatabase 1
ReferenceSequence referenceDatabase 1
GO_BiologicalProcess referenceDatabase 1
ReferenceMolecule referenceDatabase 1
DatabaseIdentifier referenceDatabase 1
ReferenceRNASequence referenceDatabase 1
GO_MolecularFunction referenceDatabase 1
Compartment referenceDatabase 1
PsiMod referenceDatabase 1
ReferenceIsoform referenceDatabase 1
ExternalOntology referenceDatabase 1
SequenceOntology referenceDatabase 1
ReferenceGroup referenceDatabase 1
ReferenceGeneProduct referenceDatabase 1
CellType referenceDatabase 1
GO_CellularComponent referenceDatabase 1
ReferenceTherapeutic referenceDatabase 1
EntityCompartment referenceDatabase 1
ReferenceEntity referenceDatabase 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.