Reactome: A Curated Pathway Database

Attributes of class 'Polymer'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredProt 1 TEXT N/A Polymer   TEXT
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
maxHomologues 1 TEXT N/A Polymer   TEXT
maxUnitCount 1 INTEGER N/A Polymer   INTEGER(10)
minUnitCount 1 INTEGER N/A Polymer   INTEGER(10)
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
repeatedUnit + INSTANCE PhysicalEntity Polymer ALL INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species Polymer   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
totalProt 1 TEXT N/A Polymer   TEXT

Referers of class 'Polymer' instances

Class name Attribute name Cardinality
Polymer repeatedUnit +
_Deleted replacementInstances +
PositiveGeneExpressionRegulation regulator 1
Requirement regulator 1
PositiveRegulation regulator 1
Regulation regulator 1
NegativeRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
ReactionlikeEvent input +
BlackBoxEvent input +
Polymerisation input +
Depolymerisation input +
Reaction input +
FailedReaction input +
ConcurrentEventSet focusEntity +
Requirement activeUnit +
CatalystActivity activeUnit +
PositiveGeneExpressionRegulation activeUnit +
Regulation activeUnit +
NegativeRegulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
PositiveRegulation activeUnit +
VertexSearchableTerm termProvider +
CatalystActivity physicalEntity 1
EntityFunctionalStatus physicalEntity 1
DefinedSet hasMember +
CandidateSet hasMember +
OpenSet hasMember +
EntitySet hasMember +
Polymerisation entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Depolymerisation entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
FailedReaction entityOnOtherCell +
Complex entityOnOtherCell +
Reaction entityOnOtherCell +
PhysicalEntity inferredFrom +
DefinedSet inferredFrom +
SimpleEntity inferredFrom +
OtherEntity inferredFrom +
Complex inferredFrom +
EntityWithAccessionedSequence inferredFrom +
CandidateSet inferredFrom +
Polymer inferredFrom +
OpenSet inferredFrom +
GenomeEncodedEntity inferredFrom +
EntitySet inferredFrom +
Polymerisation output +
BlackBoxEvent output +
Depolymerisation output +
ReactionlikeEvent output +
FailedReaction output +
Reaction output +
ReactionlikeEvent requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Polymerisation requiredInputComponent +
Depolymerisation requiredInputComponent +
Reaction requiredInputComponent +
FailedReaction requiredInputComponent +
OpenSet inferredTo +
EntitySet inferredTo +
GenomeEncodedEntity inferredTo +
Polymer inferredTo +
CandidateSet inferredTo +
EntityWithAccessionedSequence inferredTo +
Complex inferredTo +
DefinedSet inferredTo +
PhysicalEntity inferredTo +
SimpleEntity inferredTo +
OtherEntity inferredTo +
Complex hasComponent +
GroupModifiedResidue modification 1
CrosslinkedResidue modification 1
InterChainCrosslinkedResidue modification 1
IntraChainCrosslinkedResidue modification 1
CandidateSet hasCandidate +
EntityVertex representedInstance 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.