Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
ReactionlikeEvent edited +
NegativeRegulation edited +
Depolymerisation edited +
NegativeGeneExpressionRegulation edited +
OpenSet edited +
BlackBoxEvent edited +
PositiveGeneExpressionRegulation edited +
Regulation edited +
GenomeEncodedEntity edited +
EntitySet edited +
Reaction edited +
Pathway edited +
PhysicalEntity edited +
EntityWithAccessionedSequence edited +
CandidateSet edited +
Event edited +
Polymerisation edited +
PositiveRegulation edited +
OtherEntity edited +
Requirement edited +
SimpleEntity edited +
Polymer edited +
FailedReaction edited +
DefinedSet edited +
Complex edited +
Pathway revised +
Reaction revised +
Regulation revised +
EntitySet revised +
GenomeEncodedEntity revised +
PositiveGeneExpressionRegulation revised +
BlackBoxEvent revised +
OpenSet revised +
Depolymerisation revised +
NegativeGeneExpressionRegulation revised +
NegativeRegulation revised +
ReactionlikeEvent revised +
Complex revised +
DefinedSet revised +
FailedReaction revised +
Requirement revised +
SimpleEntity revised +
Polymer revised +
PositiveRegulation revised +
OtherEntity revised +
Polymerisation revised +
Event revised +
PhysicalEntity revised +
EntityWithAccessionedSequence revised +
CandidateSet revised +
_InstanceBeforeChange instanceEdit 1
_AttributeValueBeforeChange modified +
Affiliation modified +
GroupModifiedResidue modified +
ReferenceMolecule modified +
GO_CellularComponent modified +
ReferenceRNASequence modified +
PathwayDiagramItem modified +
FragmentInsertionModification modified +
DatabaseIdentifier modified +
AbstractModifiedResidue modified +
ControlledVocabulary modified +
_Deleted modified +
ReferenceIsoform modified +
PsiMod modified +
FunctionalStatusType modified +
ReferenceDNASequence modified +
ReplacedResidue modified +
ExternalOntology modified +
FragmentDeletionModification modified +
PositiveRegulation modified +
StableIdentifier modified +
PathwayCoordinates modified +
Reaction modified +
EntityFunctionalStatus modified +
FrontPage modified +
CatalystActivity modified +
Book modified +
CrosslinkedResidue modified +
ReactionCoordinates modified +
Depolymerisation modified +
OpenSet modified +
Summation modified +
Compartment modified +
ReactionVertex modified +
CellType modified +
FailedReaction modified +
FunctionalStatus modified +
CandidateSet modified +
ReferenceGeneProduct modified +
LiteratureReference modified +
PositiveGeneExpressionRegulation modified +
GO_BiologicalProcess modified +
EntitySet modified +
Vertex modified +
ReferenceDatabase modified +
IntraChainCrosslinkedResidue modified +
Figure modified +
FragmentReplacedModification modified +
_Release modified +
FragmentModification modified +
URL modified +
NegativeGeneExpressionRegulation modified +
Requirement modified +
PathwayDiagram modified +
Species modified +
ModifiedResidue modified +
Disease modified +
DefinedSet modified +
Edge modified +
PhysicalEntity modified +
EntityWithAccessionedSequence modified +
DeletedControlledVocabulary modified +
ReferenceSequence modified +
Event modified +
VertexSearchableTerm modified +
ReferenceEntity modified +
Polymerisation modified +
ReferenceGroup modified +
GO_MolecularFunction modified +
_InstanceBeforeChange modified +
BlackBoxEvent modified +
GenomeEncodedEntity modified +
TranslationalModification modified +
ConcurrentEventSet modified +
DatabaseObject modified +
ReactionlikeEvent modified +
GeneticallyModifiedResidue modified +
NegativeRegulation modified +
SimpleEntity modified +
Polymer modified +
InstanceEdit modified +
EntityCompartment modified +
InterChainCrosslinkedResidue modified +
Complex modified +
SequenceOntology modified +
OtherEntity modified +
EvidenceType modified +
Regulation modified +
Person modified +
Pathway modified +
Publication modified +
Taxon modified +
PathwayVertex modified +
EntityVertex modified +
OtherEntity reviewed +
PositiveRegulation reviewed +
Polymerisation reviewed +
Event reviewed +
CandidateSet reviewed +
EntityWithAccessionedSequence reviewed +
PhysicalEntity reviewed +
DefinedSet reviewed +
Complex reviewed +
FailedReaction reviewed +
SimpleEntity reviewed +
Polymer reviewed +
Requirement reviewed +
OpenSet reviewed +
Depolymerisation reviewed +
NegativeGeneExpressionRegulation reviewed +
NegativeRegulation reviewed +
ReactionlikeEvent reviewed +
Pathway reviewed +
Reaction reviewed +
EntitySet reviewed +
GenomeEncodedEntity reviewed +
Regulation reviewed +
PositiveGeneExpressionRegulation reviewed +
BlackBoxEvent reviewed +
Requirement authored 1
SimpleEntity authored 1
Polymer authored 1
FailedReaction authored +
Complex authored 1
DefinedSet authored 1
PhysicalEntity authored 1
EntityWithAccessionedSequence authored 1
CandidateSet authored 1
Event authored +
Polymerisation authored +
PositiveRegulation authored 1
OtherEntity authored 1
BlackBoxEvent authored +
PositiveGeneExpressionRegulation authored 1
Regulation authored 1
GenomeEncodedEntity authored 1
EntitySet authored 1
Reaction authored +
Pathway authored +
ReactionlikeEvent authored +
NegativeRegulation authored 1
NegativeGeneExpressionRegulation authored 1
Depolymerisation authored +
OpenSet authored 1
ReactionCoordinates created 1
OpenSet created 1
Summation created 1
Depolymerisation created 1
CrosslinkedResidue created 1
FrontPage created 1
CatalystActivity created 1
Book created 1
EntityFunctionalStatus created 1
Reaction created 1
PathwayCoordinates created 1
StableIdentifier created 1
PositiveRegulation created 1
FragmentDeletionModification created 1
PsiMod created 1
ReferenceDNASequence created 1
FunctionalStatusType created 1
ReplacedResidue created 1
ExternalOntology created 1
_Deleted created 1
ReferenceIsoform created 1
ControlledVocabulary created 1
DatabaseIdentifier created 1
FragmentInsertionModification created 1
AbstractModifiedResidue created 1
GO_CellularComponent created 1
PathwayDiagramItem created 1
ReferenceRNASequence created 1
GroupModifiedResidue created 1
Affiliation created 1
ReferenceMolecule created 1
_AttributeValueBeforeChange created 1
NegativeGeneExpressionRegulation created 1
FragmentModification created 1
URL created 1
ReferenceDatabase created 1
FragmentReplacedModification created 1
IntraChainCrosslinkedResidue created 1
Figure created 1
_Release created 1
Vertex created 1
EntitySet created 1
PositiveGeneExpressionRegulation created 1
GO_BiologicalProcess created 1
LiteratureReference created 1
ReferenceGeneProduct created 1
CandidateSet created 1
FunctionalStatus created 1
CellType created 1
FailedReaction created 1
Compartment created 1
ReactionVertex created 1
GeneticallyModifiedResidue created 1
NegativeRegulation created 1
ReactionlikeEvent created 1
ConcurrentEventSet created 1
DatabaseObject created 1
TranslationalModification created 1
GenomeEncodedEntity created 1
_InstanceBeforeChange created 1
BlackBoxEvent created 1
ReferenceGroup created 1
GO_MolecularFunction created 1
ReferenceEntity created 1
Polymerisation created 1
Event created 1
VertexSearchableTerm created 1
PhysicalEntity created 1
EntityWithAccessionedSequence created 1
DeletedControlledVocabulary created 1
ReferenceSequence created 1
DefinedSet created 1
Edge created 1
Disease created 1
Requirement created 1
PathwayDiagram created 1
Species created 1
ModifiedResidue created 1
EntityVertex created 1
PathwayVertex created 1
Taxon created 1
Pathway created 1
Publication created 1
Person created 1
Regulation created 1
EvidenceType created 1
OtherEntity created 1
SequenceOntology created 1
Complex created 1
InterChainCrosslinkedResidue created 1
InstanceEdit created 1
EntityCompartment created 1
SimpleEntity created 1
Polymer created 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.