Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
Polymerisation edited +
ReactionlikeEvent edited +
NegativeGeneExpressionRegulation edited +
Polymer edited +
SimpleEntity edited +
GenomeEncodedEntity edited +
PositiveRegulation edited +
Regulation edited +
PositiveGeneExpressionRegulation edited +
PhysicalEntity edited +
FailedReaction edited +
Pathway edited +
Reaction edited +
OpenSet edited +
Requirement edited +
EntityWithAccessionedSequence edited +
Depolymerisation edited +
CandidateSet edited +
DefinedSet edited +
BlackBoxEvent edited +
OtherEntity edited +
Event edited +
Complex edited +
NegativeRegulation edited +
EntitySet edited +
Regulation reviewed +
GenomeEncodedEntity reviewed +
PositiveRegulation reviewed +
SimpleEntity reviewed +
Polymer reviewed +
NegativeGeneExpressionRegulation reviewed +
ReactionlikeEvent reviewed +
Polymerisation reviewed +
EntityWithAccessionedSequence reviewed +
Depolymerisation reviewed +
Requirement reviewed +
OpenSet reviewed +
Reaction reviewed +
Pathway reviewed +
FailedReaction reviewed +
PhysicalEntity reviewed +
PositiveGeneExpressionRegulation reviewed +
DefinedSet reviewed +
CandidateSet reviewed +
EntitySet reviewed +
NegativeRegulation reviewed +
Complex reviewed +
Event reviewed +
OtherEntity reviewed +
BlackBoxEvent reviewed +
_InstanceBeforeChange instanceEdit 1
CandidateSet authored 1
DefinedSet authored 1
OtherEntity authored 1
BlackBoxEvent authored +
Event authored +
NegativeRegulation authored 1
Complex authored 1
EntitySet authored 1
NegativeGeneExpressionRegulation authored 1
ReactionlikeEvent authored +
Polymerisation authored +
Polymer authored 1
SimpleEntity authored 1
Regulation authored 1
GenomeEncodedEntity authored 1
PositiveRegulation authored 1
PhysicalEntity authored 1
PositiveGeneExpressionRegulation authored 1
Pathway authored +
Reaction authored +
FailedReaction authored +
OpenSet authored 1
Requirement authored 1
Depolymerisation authored +
EntityWithAccessionedSequence authored 1
Pathway revised +
Reaction revised +
FailedReaction revised +
PhysicalEntity revised +
PositiveGeneExpressionRegulation revised +
Requirement revised +
Depolymerisation revised +
EntityWithAccessionedSequence revised +
OpenSet revised +
Polymer revised +
NegativeGeneExpressionRegulation revised +
ReactionlikeEvent revised +
Polymerisation revised +
PositiveRegulation revised +
GenomeEncodedEntity revised +
Regulation revised +
SimpleEntity revised +
Event revised +
OtherEntity revised +
BlackBoxEvent revised +
EntitySet revised +
NegativeRegulation revised +
Complex revised +
DefinedSet revised +
CandidateSet revised +
GO_BiologicalProcess created 1
ReferenceGeneProduct created 1
ModifiedResidue created 1
ReferenceMolecule created 1
DefinedSet created 1
ReplacedResidue created 1
Affiliation created 1
CandidateSet created 1
Vertex created 1
TranslationalModification created 1
NegativeRegulation created 1
Complex created 1
Figure created 1
OtherEntity created 1
ExternalOntology created 1
ReactionlikeEvent created 1
CellType created 1
FunctionalStatus created 1
Requirement created 1
InstanceEdit created 1
ReferenceSequence created 1
ConcurrentEventSet created 1
Disease created 1
ReferenceGroup created 1
PathwayDiagramItem created 1
ReferenceDNASequence created 1
IntraChainCrosslinkedResidue created 1
_Deleted created 1
Taxon created 1
_Release created 1
FrontPage created 1
GO_CellularComponent created 1
Book created 1
StableIdentifier created 1
SequenceOntology created 1
GeneticallyModifiedResidue created 1
URL created 1
Event created 1
Edge created 1
_InstanceBeforeChange created 1
Species created 1
OpenSet created 1
FragmentModification created 1
CatalystActivity created 1
ReferenceIsoform created 1
Publication created 1
EntityCompartment created 1
ReferenceRNASequence created 1
PathwayDiagram created 1
DatabaseObject created 1
EntitySet created 1
PsiMod created 1
PathwayVertex created 1
FragmentDeletionModification created 1
DeletedControlledVocabulary created 1
BlackBoxEvent created 1
VertexSearchableTerm created 1
GO_MolecularFunction created 1
Polymer created 1
DatabaseIdentifier created 1
EvidenceType created 1
FragmentInsertionModification created 1
_AttributeValueBeforeChange created 1
Depolymerisation created 1
ReferenceEntity created 1
Person created 1
ControlledVocabulary created 1
InterChainCrosslinkedResidue created 1
ReactionVertex created 1
CrosslinkedResidue created 1
FunctionalStatusType created 1
Compartment created 1
FragmentReplacedModification created 1
PathwayCoordinates created 1
EntityFunctionalStatus created 1
LiteratureReference created 1
GenomeEncodedEntity created 1
PositiveRegulation created 1
Regulation created 1
GroupModifiedResidue created 1
SimpleEntity created 1
EntityVertex created 1
AbstractModifiedResidue created 1
Summation created 1
NegativeGeneExpressionRegulation created 1
Polymerisation created 1
ReferenceDatabase created 1
ReactionCoordinates created 1
EntityWithAccessionedSequence created 1
Pathway created 1
Reaction created 1
FailedReaction created 1
PhysicalEntity created 1
PositiveGeneExpressionRegulation created 1
InstanceEdit modified +
Requirement modified +
FunctionalStatus modified +
Disease modified +
ReferenceSequence modified +
ConcurrentEventSet modified +
ReactionlikeEvent modified +
CellType modified +
Complex modified +
NegativeRegulation modified +
TranslationalModification modified +
ExternalOntology modified +
OtherEntity modified +
Figure modified +
ReferenceGeneProduct modified +
GO_BiologicalProcess modified +
Affiliation modified +
Vertex modified +
CandidateSet modified +
ReferenceMolecule modified +
ReplacedResidue modified +
ModifiedResidue modified +
DefinedSet modified +
OpenSet modified +
Species modified +
CatalystActivity modified +
FragmentModification modified +
_InstanceBeforeChange modified +
Edge modified +
SequenceOntology modified +
StableIdentifier modified +
Book modified +
GO_CellularComponent modified +
URL modified +
Event modified +
GeneticallyModifiedResidue modified +
ReferenceDNASequence modified +
IntraChainCrosslinkedResidue modified +
_Deleted modified +
PathwayDiagramItem modified +
ReferenceGroup modified +
FrontPage modified +
_Release modified +
Taxon modified +
ReferenceEntity modified +
Depolymerisation modified +
_AttributeValueBeforeChange modified +
VertexSearchableTerm modified +
FragmentInsertionModification modified +
DatabaseIdentifier modified +
EvidenceType modified +
GO_MolecularFunction modified +
Polymer modified +
EntitySet modified +
BlackBoxEvent modified +
FragmentDeletionModification modified +
DeletedControlledVocabulary modified +
PsiMod modified +
PathwayVertex modified +
EntityCompartment modified +
Publication modified +
ReferenceIsoform modified +
PathwayDiagram modified +
DatabaseObject modified +
ReferenceRNASequence modified +
ReactionCoordinates modified +
EntityWithAccessionedSequence modified +
ReferenceDatabase modified +
PositiveGeneExpressionRegulation modified +
PhysicalEntity modified +
FailedReaction modified +
Reaction modified +
Pathway modified +
EntityVertex modified +
SimpleEntity modified +
GroupModifiedResidue modified +
LiteratureReference modified +
GenomeEncodedEntity modified +
Regulation modified +
PositiveRegulation modified +
EntityFunctionalStatus modified +
Polymerisation modified +
Summation modified +
NegativeGeneExpressionRegulation modified +
AbstractModifiedResidue modified +
FragmentReplacedModification modified +
Compartment modified +
PathwayCoordinates modified +
Person modified +
CrosslinkedResidue modified +
FunctionalStatusType modified +
ReactionVertex modified +
ControlledVocabulary modified +
InterChainCrosslinkedResidue modified +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.