Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
PositiveGeneExpressionRegulation authored 1
ReactionlikeEvent authored +
Polymer authored 1
OpenSet authored 1
GenomeEncodedEntity authored 1
CandidateSet authored 1
Regulation authored 1
Event authored +
ProteinDrug authored 1
PositiveRegulation authored 1
Complex authored 1
PhysicalEntity authored 1
Polymerisation authored +
ChemicalDrug authored 1
DefinedSet authored 1
EntityWithAccessionedSequence authored 1
NegativeRegulation authored 1
Pathway authored +
Reaction authored +
Depolymerisation authored +
SimpleEntity authored 1
BlackBoxEvent authored +
RNADrug authored 1
Drug authored 1
OtherEntity authored 1
EntitySet authored 1
FailedReaction authored +
Requirement authored 1
NegativeGeneExpressionRegulation authored 1
_InstanceBeforeChange instanceEdit 1
CandidateSet edited +
Regulation edited +
Event edited +
ChemicalDrug edited +
DefinedSet edited +
EntityWithAccessionedSequence edited +
Complex edited +
PositiveRegulation edited +
Polymerisation edited +
PhysicalEntity edited +
ProteinDrug edited +
Polymer edited +
ReactionlikeEvent edited +
PositiveGeneExpressionRegulation edited +
GenomeEncodedEntity edited +
OpenSet edited +
OtherEntity edited +
EntitySet edited +
NegativeGeneExpressionRegulation edited +
Requirement edited +
FailedReaction edited +
Depolymerisation edited +
Reaction edited +
Pathway edited +
NegativeRegulation edited +
RNADrug edited +
Drug edited +
SimpleEntity edited +
BlackBoxEvent edited +
NegativeRegulation revised +
Pathway revised +
Reaction revised +
Depolymerisation revised +
BlackBoxEvent revised +
SimpleEntity revised +
Drug revised +
RNADrug revised +
OtherEntity revised +
EntitySet revised +
FailedReaction revised +
Requirement revised +
NegativeGeneExpressionRegulation revised +
ReactionlikeEvent revised +
PositiveGeneExpressionRegulation revised +
Polymer revised +
OpenSet revised +
GenomeEncodedEntity revised +
Regulation revised +
CandidateSet revised +
Event revised +
ProteinDrug revised +
PositiveRegulation revised +
Complex revised +
PhysicalEntity revised +
Polymerisation revised +
EntityWithAccessionedSequence revised +
ChemicalDrug revised +
DefinedSet revised +
ReferenceRNASequence created 1
Publication created 1
ExternalOntology created 1
Compartment created 1
CrosslinkedResidue created 1
InterChainCrosslinkedResidue created 1
EntitySet created 1
URL created 1
Vertex created 1
EntityVertex created 1
FailedReaction created 1
StableIdentifier created 1
GO_MolecularFunction created 1
PathwayCoordinates created 1
Summation created 1
ReactionlikeEvent created 1
GroupModifiedResidue created 1
DeletedControlledVocabulary created 1
GenomeEncodedEntity created 1
Edge created 1
ReferenceGeneProduct created 1
ModifiedResidue created 1
Complex created 1
PositiveRegulation created 1
LiteratureReference created 1
EntityWithAccessionedSequence created 1
ChemicalDrug created 1
ReferenceMolecule created 1
Taxon created 1
GO_CellularComponent created 1
RNADrug created 1
Drug created 1
BlackBoxEvent created 1
ControlledVocabulary created 1
OtherEntity created 1
InstanceEdit created 1
_Deleted created 1
FragmentInsertionModification created 1
Requirement created 1
NegativeGeneExpressionRegulation created 1
ConcurrentEventSet created 1
ReactionVertex created 1
Affiliation created 1
ReferenceEntity created 1
ReferenceDNASequence created 1
_AttributeValueBeforeChange created 1
PathwayVertex created 1
CandidateSet created 1
FragmentDeletionModification created 1
Figure created 1
IntraChainCrosslinkedResidue created 1
ReplacedResidue created 1
FragmentModification created 1
ProteinDrug created 1
DatabaseIdentifier created 1
Reaction created 1
Depolymerisation created 1
GO_BiologicalProcess created 1
Pathway created 1
SimpleEntity created 1
PsiMod created 1
Disease created 1
Polymer created 1
PositiveGeneExpressionRegulation created 1
PathwayDiagramItem created 1
Person created 1
ReferenceDatabase created 1
TranslationalModification created 1
FunctionalStatusType created 1
EntityCompartment created 1
CellType created 1
Event created 1
Polymerisation created 1
FrontPage created 1
PathwayDiagram created 1
Species created 1
NegativeRegulation created 1
GeneticallyModifiedResidue created 1
SequenceOntology created 1
_InstanceBeforeChange created 1
DatabaseObject created 1
Book created 1
ReferenceSequence created 1
ReferenceIsoform created 1
FragmentReplacedModification created 1
FunctionalStatus created 1
EntityFunctionalStatus created 1
OpenSet created 1
ReferenceGroup created 1
Regulation created 1
_Release created 1
ReactionCoordinates created 1
VertexSearchableTerm created 1
PhysicalEntity created 1
CatalystActivity created 1
DefinedSet created 1
EvidenceType created 1
AbstractModifiedResidue created 1
ReferenceTherapeutic created 1
Drug reviewed +
RNADrug reviewed +
SimpleEntity reviewed +
BlackBoxEvent reviewed +
Depolymerisation reviewed +
Reaction reviewed +
Pathway reviewed +
NegativeRegulation reviewed +
NegativeGeneExpressionRegulation reviewed +
Requirement reviewed +
FailedReaction reviewed +
OtherEntity reviewed +
EntitySet reviewed +
GenomeEncodedEntity reviewed +
OpenSet reviewed +
Polymer reviewed +
ReactionlikeEvent reviewed +
PositiveGeneExpressionRegulation reviewed +
ChemicalDrug reviewed +
EntityWithAccessionedSequence reviewed +
DefinedSet reviewed +
PhysicalEntity reviewed +
Complex reviewed +
PositiveRegulation reviewed +
Polymerisation reviewed +
ProteinDrug reviewed +
CandidateSet reviewed +
Event reviewed +
Regulation reviewed +
PathwayVertex modified +
CandidateSet modified +
ReplacedResidue modified +
FragmentDeletionModification modified +
IntraChainCrosslinkedResidue modified +
Figure modified +
FragmentModification modified +
DatabaseIdentifier modified +
ProteinDrug modified +
Affiliation modified +
ReactionVertex modified +
ReferenceDNASequence modified +
ReferenceEntity modified +
_AttributeValueBeforeChange modified +
InstanceEdit modified +
OtherEntity modified +
_Deleted modified +
NegativeGeneExpressionRegulation modified +
FragmentInsertionModification modified +
Requirement modified +
ConcurrentEventSet modified +
Taxon modified +
GO_CellularComponent modified +
RNADrug modified +
Drug modified +
ControlledVocabulary modified +
BlackBoxEvent modified +
ReferenceGeneProduct modified +
ModifiedResidue modified +
EntityWithAccessionedSequence modified +
LiteratureReference modified +
ChemicalDrug modified +
ReferenceMolecule modified +
Complex modified +
PositiveRegulation modified +
Summation modified +
PathwayCoordinates modified +
GroupModifiedResidue modified +
ReactionlikeEvent modified +
GenomeEncodedEntity modified +
DeletedControlledVocabulary modified +
Edge modified +
URL modified +
EntitySet modified +
CrosslinkedResidue modified +
InterChainCrosslinkedResidue modified +
Vertex modified +
GO_MolecularFunction modified +
FailedReaction modified +
EntityVertex modified +
StableIdentifier modified +
ReferenceRNASequence modified +
ExternalOntology modified +
Publication modified +
Compartment modified +
_Release modified +
Regulation modified +
ReferenceGroup modified +
ReactionCoordinates modified +
VertexSearchableTerm modified +
EvidenceType modified +
DefinedSet modified +
CatalystActivity modified +
PhysicalEntity modified +
ReferenceTherapeutic modified +
AbstractModifiedResidue modified +
ReferenceIsoform modified +
FunctionalStatus modified +
FragmentReplacedModification modified +
EntityFunctionalStatus modified +
OpenSet modified +
DatabaseObject modified +
ReferenceSequence modified +
Book modified +
NegativeRegulation modified +
GeneticallyModifiedResidue modified +
SequenceOntology modified +
_InstanceBeforeChange modified +
CellType modified +
Event modified +
Polymerisation modified +
Species modified +
PathwayDiagram modified +
FrontPage modified +
Polymer modified +
PositiveGeneExpressionRegulation modified +
PathwayDiagramItem modified +
Person modified +
ReferenceDatabase modified +
EntityCompartment modified +
FunctionalStatusType modified +
TranslationalModification modified +
PsiMod modified +
Disease modified +
Depolymerisation modified +
Reaction modified +
Pathway modified +
GO_BiologicalProcess modified +
SimpleEntity modified +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.