Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
Polymer reviewed +
NegativeGeneExpressionRegulation reviewed +
Requirement reviewed +
CandidateSet reviewed +
OpenSet reviewed +
EntityWithAccessionedSequence reviewed +
SimpleEntity reviewed +
OtherEntity reviewed +
PositiveGeneExpressionRegulation reviewed +
GenomeEncodedEntity reviewed +
ReactionlikeEvent reviewed +
Event reviewed +
Pathway reviewed +
Polymerisation reviewed +
PhysicalEntity reviewed +
PositiveRegulation reviewed +
Regulation reviewed +
EntitySet reviewed +
DefinedSet reviewed +
Complex reviewed +
Reaction reviewed +
BlackBoxEvent reviewed +
Depolymerisation reviewed +
NegativeRegulation reviewed +
FailedReaction reviewed +
_InstanceBeforeChange created 1
ReferenceGroup created 1
PathwayDiagram created 1
DeletedControlledVocabulary created 1
ConcurrentEventSet created 1
PositiveGeneExpressionRegulation created 1
EntityFunctionalStatus created 1
Summation created 1
AbstractModifiedResidue created 1
GroupModifiedResidue created 1
OpenSet created 1
Taxon created 1
ReactionVertex created 1
CatalystActivity created 1
Complex created 1
DefinedSet created 1
PsiMod created 1
SequenceOntology created 1
InterChainCrosslinkedResidue created 1
EntityCompartment created 1
FrontPage created 1
DatabaseObject created 1
FragmentReplacedModification created 1
Regulation created 1
Figure created 1
DatabaseIdentifier created 1
Disease created 1
EntityVertex created 1
_Release created 1
Compartment created 1
Pathway created 1
GO_BiologicalProcess created 1
VertexSearchableTerm created 1
ReferenceEntity created 1
Requirement created 1
ReplacedResidue created 1
FragmentDeletionModification created 1
StableIdentifier created 1
ExternalOntology created 1
Polymer created 1
GeneticallyModifiedResidue created 1
FailedReaction created 1
CrosslinkedResidue created 1
ReferenceRNASequence created 1
PathwayDiagramItem created 1
Vertex created 1
Polymerisation created 1
Publication created 1
ReactionlikeEvent created 1
Event created 1
FunctionalStatusType created 1
_Deleted created 1
SimpleEntity created 1
Affiliation created 1
GenomeEncodedEntity created 1
Book created 1
Person created 1
ReferenceIsoform created 1
FunctionalStatus created 1
NegativeGeneExpressionRegulation created 1
FragmentInsertionModification created 1
PathwayVertex created 1
Reaction created 1
BlackBoxEvent created 1
PositiveRegulation created 1
_AttributeValueBeforeChange created 1
EvidenceType created 1
ReferenceSequence created 1
Species created 1
EntitySet created 1
ControlledVocabulary created 1
InstanceEdit created 1
ModifiedResidue created 1
OtherEntity created 1
GO_MolecularFunction created 1
CandidateSet created 1
ReferenceDatabase created 1
FragmentModification created 1
EntityWithAccessionedSequence created 1
ReactionCoordinates created 1
Edge created 1
NegativeRegulation created 1
Depolymerisation created 1
ReferenceGeneProduct created 1
GO_CellularComponent created 1
CellType created 1
ReferenceMolecule created 1
IntraChainCrosslinkedResidue created 1
URL created 1
PathwayCoordinates created 1
TranslationalModification created 1
ReferenceDNASequence created 1
PhysicalEntity created 1
LiteratureReference created 1
Pathway revised +
ReactionlikeEvent revised +
Event revised +
GenomeEncodedEntity revised +
PositiveGeneExpressionRegulation revised +
OtherEntity revised +
SimpleEntity revised +
EntityWithAccessionedSequence revised +
OpenSet revised +
Requirement revised +
CandidateSet revised +
NegativeGeneExpressionRegulation revised +
Polymer revised +
FailedReaction revised +
NegativeRegulation revised +
Depolymerisation revised +
BlackBoxEvent revised +
Reaction revised +
DefinedSet revised +
Complex revised +
EntitySet revised +
Regulation revised +
PositiveRegulation revised +
PhysicalEntity revised +
Polymerisation revised +
ExternalOntology modified +
StableIdentifier modified +
Polymer modified +
Requirement modified +
ReplacedResidue modified +
FragmentDeletionModification modified +
ReferenceEntity modified +
Compartment modified +
GO_BiologicalProcess modified +
Pathway modified +
VertexSearchableTerm modified +
Vertex modified +
Polymerisation modified +
PathwayDiagramItem modified +
CrosslinkedResidue modified +
ReferenceRNASequence modified +
GeneticallyModifiedResidue modified +
FailedReaction modified +
CatalystActivity modified +
EntityFunctionalStatus modified +
Summation modified +
AbstractModifiedResidue modified +
OpenSet modified +
GroupModifiedResidue modified +
Taxon modified +
ReactionVertex modified +
ConcurrentEventSet modified +
DeletedControlledVocabulary modified +
PositiveGeneExpressionRegulation modified +
_InstanceBeforeChange modified +
ReferenceGroup modified +
PathwayDiagram modified +
Disease modified +
DatabaseIdentifier modified +
EntityVertex modified +
_Release modified +
DatabaseObject modified +
FrontPage modified +
EntityCompartment modified +
FragmentReplacedModification modified +
Regulation modified +
Figure modified +
Complex modified +
DefinedSet modified +
PsiMod modified +
SequenceOntology modified +
InterChainCrosslinkedResidue modified +
ReactionCoordinates modified +
GO_MolecularFunction modified +
CandidateSet modified +
ReferenceDatabase modified +
EntityWithAccessionedSequence modified +
FragmentModification modified +
ModifiedResidue modified +
OtherEntity modified +
InstanceEdit modified +
IntraChainCrosslinkedResidue modified +
URL modified +
PathwayCoordinates modified +
TranslationalModification modified +
LiteratureReference modified +
ReferenceDNASequence modified +
PhysicalEntity modified +
ReferenceMolecule modified +
GO_CellularComponent modified +
CellType modified +
NegativeRegulation modified +
ReferenceGeneProduct modified +
Depolymerisation modified +
Edge modified +
NegativeGeneExpressionRegulation modified +
FunctionalStatus modified +
ReferenceIsoform modified +
SimpleEntity modified +
_Deleted modified +
Affiliation modified +
Person modified +
Book modified +
GenomeEncodedEntity modified +
Publication modified +
ReactionlikeEvent modified +
Event modified +
FunctionalStatusType modified +
ControlledVocabulary modified +
EvidenceType modified +
_AttributeValueBeforeChange modified +
PositiveRegulation modified +
ReferenceSequence modified +
Species modified +
EntitySet modified +
Reaction modified +
BlackBoxEvent modified +
PathwayVertex modified +
FragmentInsertionModification modified +
EntityWithAccessionedSequence edited +
OpenSet edited +
CandidateSet edited +
Requirement edited +
NegativeGeneExpressionRegulation edited +
Polymer edited +
Pathway edited +
ReactionlikeEvent edited +
Event edited +
GenomeEncodedEntity edited +
PositiveGeneExpressionRegulation edited +
OtherEntity edited +
SimpleEntity edited +
EntitySet edited +
Regulation edited +
PositiveRegulation edited +
PhysicalEntity edited +
Polymerisation edited +
FailedReaction edited +
Depolymerisation edited +
NegativeRegulation edited +
BlackBoxEvent edited +
Reaction edited +
DefinedSet edited +
Complex edited +
Depolymerisation authored +
NegativeRegulation authored 1
FailedReaction authored +
Complex authored 1
DefinedSet authored 1
Reaction authored +
BlackBoxEvent authored +
PositiveRegulation authored 1
Regulation authored 1
EntitySet authored 1
Polymerisation authored +
PhysicalEntity authored 1
ReactionlikeEvent authored +
Event authored +
Pathway authored +
SimpleEntity authored 1
OtherEntity authored 1
PositiveGeneExpressionRegulation authored 1
GenomeEncodedEntity authored 1
CandidateSet authored 1
Requirement authored 1
OpenSet authored 1
EntityWithAccessionedSequence authored 1
Polymer authored 1
NegativeGeneExpressionRegulation authored 1
_InstanceBeforeChange instanceEdit 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.