Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
ControlledVocabulary modified +
Summation modified +
GO_CellularComponent modified +
Complex modified +
ReplacedResidue modified +
_Release modified +
OtherEntity modified +
ReactionlikeEvent modified +
Publication modified +
SimpleEntity modified +
_Deleted modified +
Disease modified +
SequenceOntology modified +
Reaction modified +
LiteratureReference modified +
Polymer modified +
FailedReaction modified +
StableIdentifier modified +
EntityFunctionalStatus modified +
ReferenceEntity modified +
ReactionCoordinates modified +
OpenSet modified +
ReferenceGeneProduct modified +
ReferenceSequence modified +
PathwayDiagramItem modified +
DatabaseObject modified +
Requirement modified +
Polymerisation modified +
ModifiedResidue modified +
TranslationalModification modified +
CandidateSet modified +
ReferenceMolecule modified +
DefinedSet modified +
Edge modified +
Pathway modified +
PhysicalEntity modified +
_InstanceBeforeChange modified +
FragmentDeletionModification modified +
PsiMod modified +
Compartment modified +
ReferenceDatabase modified +
Species modified +
AbstractModifiedResidue modified +
EvidenceType modified +
_AttributeValueBeforeChange modified +
Taxon modified +
PositiveRegulation modified +
NegativeRegulation modified +
PathwayVertex modified +
FragmentInsertionModification modified +
Person modified +
ReactionVertex modified +
IntraChainCrosslinkedResidue modified +
DatabaseIdentifier modified +
FragmentModification modified +
ReferenceIsoform modified +
CatalystActivity modified +
PositiveGeneExpressionRegulation modified +
DeletedControlledVocabulary modified +
Event modified +
PathwayDiagram modified +
GenomeEncodedEntity modified +
FunctionalStatus modified +
InterChainCrosslinkedResidue modified +
CrosslinkedResidue modified +
EntityVertex modified +
NegativeGeneExpressionRegulation modified +
Regulation modified +
Book modified +
GO_BiologicalProcess modified +
BlackBoxEvent modified +
EntityWithAccessionedSequence modified +
CellType modified +
FragmentReplacedModification modified +
ConcurrentEventSet modified +
InstanceEdit modified +
Affiliation modified +
GeneticallyModifiedResidue modified +
ExternalOntology modified +
GO_MolecularFunction modified +
URL modified +
ReferenceDNASequence modified +
VertexSearchableTerm modified +
GroupModifiedResidue modified +
Vertex modified +
ReferenceGroup modified +
FrontPage modified +
EntityCompartment modified +
EntitySet modified +
ReferenceRNASequence modified +
FunctionalStatusType modified +
Depolymerisation modified +
Figure modified +
PathwayCoordinates modified +
PhysicalEntity authored 1
Pathway authored +
PositiveGeneExpressionRegulation authored 1
Reaction authored +
Polymer authored 1
EntitySet authored 1
GenomeEncodedEntity authored 1
FailedReaction authored +
Event authored +
Depolymerisation authored +
OpenSet authored 1
BlackBoxEvent authored +
EntityWithAccessionedSequence authored 1
Regulation authored 1
NegativeGeneExpressionRegulation authored 1
PositiveRegulation authored 1
NegativeRegulation authored 1
Complex authored 1
Requirement authored 1
Polymerisation authored +
CandidateSet authored 1
OtherEntity authored 1
ReactionlikeEvent authored +
SimpleEntity authored 1
DefinedSet authored 1
CandidateSet edited +
DefinedSet edited +
SimpleEntity edited +
ReactionlikeEvent edited +
OtherEntity edited +
NegativeGeneExpressionRegulation edited +
Regulation edited +
NegativeRegulation edited +
PositiveRegulation edited +
EntityWithAccessionedSequence edited +
BlackBoxEvent edited +
Requirement edited +
Polymerisation edited +
Complex edited +
Depolymerisation edited +
Event edited +
FailedReaction edited +
GenomeEncodedEntity edited +
OpenSet edited +
Reaction edited +
PositiveGeneExpressionRegulation edited +
Pathway edited +
PhysicalEntity edited +
EntitySet edited +
Polymer edited +
_InstanceBeforeChange instanceEdit 1
PhysicalEntity created 1
Pathway created 1
Edge created 1
Compartment created 1
PsiMod created 1
FragmentDeletionModification created 1
_InstanceBeforeChange created 1
Species created 1
ReferenceDatabase created 1
Taxon created 1
AbstractModifiedResidue created 1
_AttributeValueBeforeChange created 1
EvidenceType created 1
DatabaseObject created 1
PathwayDiagramItem created 1
ReferenceSequence created 1
TranslationalModification created 1
Requirement created 1
ModifiedResidue created 1
Polymerisation created 1
CandidateSet created 1
DefinedSet created 1
ReferenceMolecule created 1
Reaction created 1
SequenceOntology created 1
_Deleted created 1
Disease created 1
Polymer created 1
LiteratureReference created 1
StableIdentifier created 1
FailedReaction created 1
ReferenceGeneProduct created 1
ReactionCoordinates created 1
ReferenceEntity created 1
OpenSet created 1
EntityFunctionalStatus created 1
Summation created 1
ControlledVocabulary created 1
Complex created 1
GO_CellularComponent created 1
ReplacedResidue created 1
_Release created 1
SimpleEntity created 1
Publication created 1
ReactionlikeEvent created 1
OtherEntity created 1
ReferenceGroup created 1
FunctionalStatusType created 1
ReferenceRNASequence created 1
EntitySet created 1
FrontPage created 1
EntityCompartment created 1
Figure created 1
Depolymerisation created 1
PathwayCoordinates created 1
FragmentReplacedModification created 1
EntityWithAccessionedSequence created 1
CellType created 1
BlackBoxEvent created 1
GO_BiologicalProcess created 1
Book created 1
NegativeGeneExpressionRegulation created 1
Regulation created 1
GO_MolecularFunction created 1
ExternalOntology created 1
GeneticallyModifiedResidue created 1
InstanceEdit created 1
ConcurrentEventSet created 1
Affiliation created 1
ReferenceDNASequence created 1
URL created 1
Vertex created 1
VertexSearchableTerm created 1
GroupModifiedResidue created 1
PositiveGeneExpressionRegulation created 1
DeletedControlledVocabulary created 1
GenomeEncodedEntity created 1
PathwayDiagram created 1
Event created 1
EntityVertex created 1
CrosslinkedResidue created 1
InterChainCrosslinkedResidue created 1
FunctionalStatus created 1
FragmentInsertionModification created 1
PathwayVertex created 1
NegativeRegulation created 1
PositiveRegulation created 1
DatabaseIdentifier created 1
IntraChainCrosslinkedResidue created 1
ReactionVertex created 1
Person created 1
ReferenceIsoform created 1
FragmentModification created 1
CatalystActivity created 1
PhysicalEntity reviewed +
Pathway reviewed +
PositiveGeneExpressionRegulation reviewed +
Reaction reviewed +
Polymer reviewed +
EntitySet reviewed +
GenomeEncodedEntity reviewed +
FailedReaction reviewed +
Event reviewed +
Depolymerisation reviewed +
OpenSet reviewed +
BlackBoxEvent reviewed +
EntityWithAccessionedSequence reviewed +
NegativeRegulation reviewed +
NegativeGeneExpressionRegulation reviewed +
Regulation reviewed +
PositiveRegulation reviewed +
Complex reviewed +
Requirement reviewed +
Polymerisation reviewed +
CandidateSet reviewed +
OtherEntity reviewed +
SimpleEntity reviewed +
ReactionlikeEvent reviewed +
DefinedSet reviewed +
EntitySet revised +
Polymer revised +
PositiveGeneExpressionRegulation revised +
Reaction revised +
PhysicalEntity revised +
Pathway revised +
OpenSet revised +
Event revised +
FailedReaction revised +
Depolymerisation revised +
GenomeEncodedEntity revised +
Requirement revised +
Polymerisation revised +
Complex revised +
NegativeGeneExpressionRegulation revised +
NegativeRegulation revised +
Regulation revised +
PositiveRegulation revised +
BlackBoxEvent revised +
EntityWithAccessionedSequence revised +
OtherEntity revised +
ReactionlikeEvent revised +
DefinedSet revised +
SimpleEntity revised +
CandidateSet revised +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.